This tool extracts protein-protein interaction and gene regulatory information from a given text document.
To test the tool, first load the test dataset, textmining.tst. To do so, go to tool panel and follow [Get data by Insilicom]->[Load dataset on the server] sequence to open a tool page. Find "Text mining tools" on the first select box and then select textmining.tst. Finally, click Execute will load the dataset on the right panel.
After dataset is shown up on the right panel, come back to this tool (Text mining -> Extracting protein/gene interactions). Select the uploaded dataset for "Dataset" box, select "Yes" for "Text has id?", "No" for "Needs to parse the text in a PubMed query format?", and "Test Dictionary" for "Protein/gene name dictionaries". Finally, click Execute to see the result shown up on the right panel.