This tool allows you to query cancer data we integrated from TCGA (the cancer genome atlas) update to 2016-01-28.
See below for an example to query RNAseqV2 unnormalized data from TCGA with Clinical information: Immune subtype, Lymphocytes and Race for Liver hepatocellular carcinoma [LIHC]:
The outputs are two files: Factor File and Count Matrix, which can be inputs for differential gene expression analysis.
Example of the first output file: Factor File_LIHC. Four columns: sampleID plus the three clinical information (IMMUNE_SUBTYPE, LYMPHOCYTES and race). A brief summary of each clinical information is provided and only a subset of the data is displayed. The full set of data can be retrieved for downstream analysis like differential gene expression analysis when using the tools developed in our platform:
Example of second output file: Count Matrix_LIHC: